Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9VG8

Crystal structure of Phaeodactylibacter sp. phosphoglucomutase in complex with magnesium ion

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2025-04-04
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.97861
Spacegroup nameP 21 21 2
Unit cell lengths61.850, 168.980, 59.136
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution84.490 - 1.650
R-factor0.2227
Rwork0.221
R-free0.26350
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle0.809
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]84.4901.740
High resolution limit [Å]1.6501.650
Number of reflections646217269
<I/σ(I)>19.2
Completeness [%]86.3
Redundancy10.4
CC(1/2)0.9990.745
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP289.150.2 M Ammonium acetate, 0.1 M Sodium citrate tribasic dihydrate pH 6.0, 24% v/v Polyethylene glycol 400 1 mM Mg2+

253795

PDB entries from 2026-05-20

PDB statisticsPDBj update infoContact PDBjnumon