9VB9

Crystal structure of the PDZ tandem of syntenin

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	PHOTON FACTORY BEAMLINE BL-17A
Synchrotron site	Photon Factory
Beamline	BL-17A
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-12-05
Detector	DECTRIS EIGER X 16M
Wavelength(s)	0.98
Spacegroup name	P 31 2 1
Unit cell lengths	56.970, 56.970, 152.027
Unit cell angles	90.00, 90.00, 120.00

Refinement procedure

Resolution	49.340 - 2.310
R-factor	0.2488
Rwork	0.245
R-free	0.31320
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	8blu
RMSD bond length	0.011
RMSD bond angle	1.223
Data reduction software	XDS
Data scaling software	Aimless
Phasing software	PHASER
Refinement software	PHENIX (1.21.2_5419)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	49.340	2.390
High resolution limit [Å]	2.310	2.310
Rmerge	0.151	1.124
Number of reflections	13240	1281
<I/σ(I)>	9.9
Completeness [%]	100.0
Redundancy	9.5

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	5.5	293	0.1 M BIS-TRIS, 25% PEG 3,350