9T4E
Human Diphosphoinositol Polyphosphate Phosphohydrolase 1 (DIPP1/NUDT3)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALBA BEAMLINE XALOC |
| Synchrotron site | ALBA |
| Beamline | XALOC |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2022-02-05 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.97926 |
| Spacegroup name | P 31 2 1 |
| Unit cell lengths | 59.942, 59.942, 83.078 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 51.910 - 1.541 |
| Rwork | 0.199 |
| R-free | 0.23390 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.808 |
| Data reduction software | autoPROC (1.0.5) |
| Data scaling software | autoPROC (1.0.5) |
| Phasing software | MOLREP (11.9.02) |
| Refinement software | REFMAC (5.8.0419) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 51.910 | 1.630 |
| High resolution limit [Å] | 1.540 | 1.540 |
| Rpim | 0.010 | 0.460 |
| Number of reflections | 19582 | 980 |
| <I/σ(I)> | 25.7 | 1.1 |
| Completeness [%] | 84.4 | |
| Redundancy | 12.7 | |
| CC(1/2) | 0.990 | 0.590 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7 | 289 | Protein: 20mg/mL Precipitant condition: 17% PEG 6K, 20mM NaF, 1mM ZnCl, 0.1M Hepes pH 7, 10 mM Na6[(PO3)6] Ratio: 1:1 |
