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9RCS

Cardioderma bat coronavirus KY43 receptor binding domain in complex with human CEACAM6

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2025-02-23
DetectorDECTRIS EIGER2 X CdTe 9M
Wavelength(s)0.620
Spacegroup nameP 1 21 1
Unit cell lengths70.010, 78.795, 82.339
Unit cell angles90.00, 88.64, 90.00
Refinement procedure
Resolution82.320 - 3.012
R-factor0.2584
Rwork0.256
R-free0.31680
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle1.071
Data reduction softwareDIALS
Data scaling softwareSTARANISO
Phasing softwarePHASER
Refinement softwarePHENIX (1.21.1_5286)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]82.3323.388
High resolution limit [Å]3.0123.012
Rmerge0.1961.259
Rmeas0.2141.370
Rpim0.0850.537
Number of reflections8711439
<I/σ(I)>5.41.6
Completeness [%]48.58.3
Redundancy6.3
CC(1/2)0.9940.583
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.3293Protein complex was 1:1.2 molar ratio CEACAM6:KY43-RBD, 2 mg/mL, in 10 mM Tris pH 7.5, 150 mM NaCl). 200 nL protein was incubated with 200 nL reservoir against an 80 uL reservoir containing 0.1 M Na acetate pH 4.3, 21.5% PEG 5K MME, 5% glycerol.

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PDB entries from 2026-04-08

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