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9RAZ

Streptococcus pyogenes GapN in complex with NADP and glyceraldehyde-3-phosphate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP14 (MX2)
Temperature [K]100
Detector technologyPIXEL
Collection date2022-06-10
DetectorDECTRIS EIGER2 S 16M
Wavelength(s)0.9763
Spacegroup nameP 1
Unit cell lengths97.150, 97.435, 100.710
Unit cell angles77.06, 78.19, 68.92
Refinement procedure
Resolution48.620 - 1.380
R-factor0.1553
Rwork0.154
R-free0.17920
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle0.743
Data reduction softwareXDS
Data scaling softwareSTARANISO
Phasing softwarePHASER
Refinement softwareREFMAC (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.6201.481
High resolution limit [Å]1.3751.375
Rmerge0.0540.811
Rmeas0.0630.966
Rpim0.0330.518
Number of reflections52866326426
<I/σ(I)>10.31.5
Completeness [%]76.419.1
Redundancy3.53.4
CC(1/2)0.9980.498
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.42950.15-0.2 M (NH4)3-citrate 21-23% PEG 3350

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PDB entries from 2025-12-10

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