9QLB

Structure of Rhyzopertha dominica dihydrolipoyl dehydrogenase variant L79A/C83A at 1.25 angstrom resolution

This is a non-PDB format compatible entry.

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron site	PETRA III, EMBL c/o DESY
Beamline	P14 (MX2)
Temperature [K]	100
Detector technology	PIXEL
Collection date	2024-09-06
Detector	DECTRIS EIGER2 X CdTe 16M
Wavelength(s)	0.97625
Spacegroup name	P 21 21 21
Unit cell lengths	66.689, 92.159, 142.957
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	48.760 - 1.250
R-factor	0.139
Rwork	0.138
R-free	0.16310
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.006
RMSD bond angle	0.898
Data reduction software	XDS
Data scaling software	XSCALE
Phasing software	PHENIX
Refinement software	PHENIX (1.20.1_4487)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	48.760	1.280
High resolution limit [Å]	1.250	1.250
Rmeas	0.053	1.110
Number of reflections	239561	17509
<I/σ(I)>	21.99	2.17
Completeness [%]	98.7	98.3
Redundancy	8.86	7.84
CC(1/2)	1.000	0.699

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP		293	Tris, Magnesium chloride, PEG3350, Formamide