9P49
Treponema denticola OppA complexed with TSGDAA and ATSAAA
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | CLSI BEAMLINE 08ID-1 |
| Synchrotron site | CLSI |
| Beamline | 08ID-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2022-08-03 |
| Detector | DECTRIS EIGER X 9M |
| Wavelength(s) | 0.9537 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 50.320, 108.300, 213.260 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 48.330 - 2.000 |
| R-factor | 0.23959 |
| Rwork | 0.238 |
| R-free | 0.26756 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Data reduction software | autoPROC |
| Data scaling software | SCALA |
| Phasing software | REFMAC |
| Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 48.330 | 2.072 |
| High resolution limit [Å] | 2.000 | 2.000 |
| Rmerge | 0.053 | 0.783 |
| Rmeas | 0.075 | |
| Rpim | 0.053 | 0.783 |
| Number of reflections | 159387 | 7838 |
| <I/σ(I)> | 6.78 | |
| Completeness [%] | 99.9 | 99.97 |
| Redundancy | 2 | 2 |
| CC(1/2) | 0.996 | 0.133 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 4.2 | 291.15 | 0.1 M Na2HPO4:citirc acid, pH 4.2, 0.2 M NaCl, 22% (w/v) PEG3350, 15% (w/v) GOL, 0.05 M L-Lys, 20 mg/mL TdOppA |






