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9O9I

Crystal structure of mouse Vps29 bound to DENND4C peptide (re-refinement)

Replaces:  8VOD
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron siteAustralian Synchrotron
BeamlineMX2
Temperature [K]100
Detector technologyPIXEL
Collection date2023-11-04
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0000
Spacegroup nameP 32 2 1
Unit cell lengths42.899, 42.899, 172.743
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution36.320 - 2.350
R-factor0.1951
Rwork0.189
R-free0.25280
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle1.056
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]37.1502.180
High resolution limit [Å]2.1102.110
Rmerge0.0900.976
Rmeas0.1011.102
Rpim0.0450.503
Total number of observations547723758
Number of reflections11234829
<I/σ(I)>7.10.8
Completeness [%]99.3
Redundancy4.94.5
CC(1/2)0.9970.460
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION8.52930.1 M Tris-HCl pH 8.5, 0.2 M MgCl2, 30% PEG 4000

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