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9O5B

RNase A in complex with N1-Methylpseudouridine Vanadate and decavanadates

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2024-02-26
DetectorRIGAKU SATURN 944
Wavelength(s)1.5418
Spacegroup nameC 1 2 1
Unit cell lengths100.310, 32.830, 72.670
Unit cell angles90.00, 90.55, 90.00
Refinement procedure
Resolution25.080 - 1.710
R-factor0.1851
Rwork0.182
R-free0.21910
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle1.145
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX ((1.21.2_5419: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]25.08025.0801.810
High resolution limit [Å]1.7105.0801.710
Rmerge0.0400.0330.130
Rmeas0.0570.0470.184
Number of reflections22880316347
<I/σ(I)>8.8
Completeness [%]25.4
Redundancy4.3
CC(1/2)0.9930.9930.947
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.5289Crystallization: 20mM Sodium Citrate pH 5.5, 25% PEG 4000 seeded with crystals grown in 20mM Sodium Citrate pH 5.5, 20% PEG 4000 Ligand soaking: 16.7mM Imidazole pH 5.5, 30% PEG 4000, 5% glycerol, 5mM N1-methylpseudouridine Vanadate

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PDB entries from 2025-12-10

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