Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9N8S

Glutarate L-2-hydroxylase Q184C mutant-5'-Mal-C2-AGCT DNA conjugate at 2.03 Angstrom resolution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSLS-II BEAMLINE 17-ID-1
Synchrotron siteNSLS-II
Beamline17-ID-1
Temperature [K]100
Detector technologyPIXEL
Collection date2024-10-10
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.920194
Spacegroup nameI 4 2 2
Unit cell lengths96.769, 96.769, 184.207
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.430 - 2.030
R-factor0.21142
Rwork0.210
R-free0.24365
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle1.774
Data reduction softwareXDS (20241002)
Data scaling softwareAimless (0.7.15)
Phasing softwarePHASER (2.8.3)
Refinement softwareREFMAC (5.8.0430)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]34.4302.080
High resolution limit [Å]2.0302.030
Rmerge0.3142.838
Rmeas0.3262.990
Rpim0.0880.904
Number of reflections283372044
<I/σ(I)>10
Completeness [%]98.897.4
Redundancy26.120
CC(1/2)0.7810.988
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2950.05 M Bis-Tris pH 7, 1.5 M Lithium sulfate

258009

PDB entries from 2026-08-12

PDB statisticsPDBj update infoContact PDBjnumon