Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9N7P

Glutarate L-2-hydroxylase Q184C mutant-5'-Mal-C2-AGCT DNA conjugate at 1.89 Angstrom resolution

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 2
Synchrotron siteSOLEIL
BeamlinePROXIMA 2
Temperature [K]100
Detector technologyPIXEL
Collection date2023-10-16
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.980099
Spacegroup nameI 4 2 2
Unit cell lengths97.043, 97.043, 185.372
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.520 - 1.891
Rwork0.200
R-free0.22830
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.004
RMSD bond angle1.149
Data reduction softwareXDS (20230630)
Data scaling softwareAimless (0.7.15)
Phasing softwarePHASER (2.8.3)
Refinement softwareREFMAC (5.8.0430)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.52048.5201.930
High resolution limit [Å]1.8909.0701.890
Rmerge0.0790.0301.467
Rmeas0.0820.0311.524
Rpim0.0220.0090.410
Number of reflections356913902208
<I/σ(I)>27.481.32.6
Completeness [%]99.899.397.4
Redundancy26.419.825.9
CC(1/2)1.0001.0000.776
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29510 % v/v Glycerol, 0.05 M MES pH 5.5, 1.5 M Ammonium sulfate

258009

PDB entries from 2026-08-12

PDB statisticsPDBj update infoContact PDBjnumon