9MDX
16mer self-complementary duplex RNA with s(2)U:A pair sequence 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 99 |
Detector technology | PIXEL |
Collection date | 2024-10-30 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.97741 |
Spacegroup name | H 3 2 |
Unit cell lengths | 41.381, 41.381, 124.071 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.430 - 1.500 |
R-factor | 0.1904 |
Rwork | 0.188 |
R-free | 0.24090 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.977 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.530 |
High resolution limit [Å] | 1.499 | 1.500 |
Rmerge | 0.057 | 0.473 |
Rmeas | 0.060 | 0.500 |
Rpim | 0.020 | 0.159 |
Number of reflections | 6663 | 323 |
<I/σ(I)> | 34.6 | 4.8 |
Completeness [%] | 96.6 | 95.3 |
Redundancy | 9.5 | 9.5 |
CC(1/2) | 1.000 | 0.907 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 2.4 M Sodium malonate pH 7.0 |