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9MDW

16mer self-complementary duplex RNA with all Watson-Crick base pairs

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.1
Synchrotron siteALS
Beamline5.0.1
Temperature [K]99
Detector technologyPIXEL
Collection date2024-10-30
DetectorDECTRIS PILATUS3 2M
Wavelength(s)0.97741
Spacegroup nameH 3 2
Unit cell lengths41.159, 41.159, 124.195
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution41.398 - 1.421
Rwork0.181
R-free0.22030
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.010
RMSD bond angle1.977
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0425)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.440
High resolution limit [Å]1.4201.420
Rmerge0.0710.481
Rmeas0.0760.511
Rpim0.0270.172
Number of reflections7975385
<I/σ(I)>4.24.2
Completeness [%]100.0100
Redundancy98.6
CC(1/2)0.9740.919
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.529820 % v/v Polyethylene glycol 200, 50 mM HEPES pH 7.5, 200 mM Potassium Chloride, 25 mM Magnesium Sulfate

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PDB entries from 2026-03-18

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