9M3B

Crystal structure of the DgpB1/C1 protein from P581a substrate free form

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SSRF BEAMLINE BL18U1
Synchrotron site	SSRF
Beamline	BL18U1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2023-02-08
Detector	DECTRIS EIGER X 16M
Wavelength(s)	0.978
Spacegroup name	C 1 2 1
Unit cell lengths	168.188, 58.873, 56.931
Unit cell angles	90.00, 97.97, 90.00

Refinement procedure

Resolution	43.946 - 2.036
R-factor	0.1929
Rwork	0.192
R-free	0.21620
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.007
RMSD bond angle	0.826
Data reduction software	HKL-3000
Data scaling software	HKL-3000
Phasing software	PHENIX
Refinement software	PHENIX ((1.16_3549: ???))

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	50.000	2.100
High resolution limit [Å]	2.000	2.000
Rmerge	0.120
Number of reflections	33683	2307
<I/σ(I)>	12.2
Completeness [%]	94.8
Redundancy	6
CC(1/2)	0.790	0.780

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP		298	0.1 M sodium malonate, pH 6.0 12% w/v PEG3350