9M19
Vitamin D receptor complex with a dibutyldiphenylsilane derivative
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | PHOTON FACTORY BEAMLINE BL-17A |
| Synchrotron site | Photon Factory |
| Beamline | BL-17A |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2024-03-12 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 0.98 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 154.694, 42.192, 42.576 |
| Unit cell angles | 90.00, 97.04, 90.00 |
Refinement procedure
| Resolution | 40.680 - 2.050 |
| R-factor | 0.1944 |
| Rwork | 0.193 |
| R-free | 0.22980 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2zlc |
| RMSD bond length | 0.006 |
| RMSD bond angle | 0.676 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHENIX |
| Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 42.260 | 2.110 |
| High resolution limit [Å] | 2.050 | 2.050 |
| Rmerge | 0.054 | 0.515 |
| Number of reflections | 17097 | 1325 |
| <I/σ(I)> | 13.3 | 2.3 |
| Completeness [%] | 98.7 | 98.2 |
| Redundancy | 3.4 | |
| CC(1/2) | 0.999 | 0.906 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 293 | PEG 3350, Tacsimate pH 7.0, HEPES pH 7.5 |
