9K3E
DddB(BadTF3) dsDNA deaminase
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU FR-X |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2022-12-04 |
| Detector | RIGAKU HyPix-6000HE |
| Wavelength(s) | 1.5418 |
| Spacegroup name | C 2 2 21 |
| Unit cell lengths | 84.069, 130.646, 61.618 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 12.620 - 2.500 |
| R-factor | 0.1988 |
| Rwork | 0.194 |
| R-free | 0.23960 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.008 |
| RMSD bond angle | 0.966 |
| Data reduction software | CrysalisPro |
| Data scaling software | CrysalisPro |
| Phasing software | PHENIX |
| Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 12.620 | 2.590 |
| High resolution limit [Å] | 2.500 | 2.500 |
| Rmerge | 0.075 | 0.298 |
| Rmeas | 0.079 | 0.315 |
| Rpim | 0.025 | 0.101 |
| Number of reflections | 11988 | 1175 |
| <I/σ(I)> | 25.4 | |
| Completeness [%] | 99.9 | |
| Redundancy | 9.8 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 293 | 10% (w/v) PEG 8000, 100 mM Potassium phosphate monobasic/ Sodium phosphate dibasic, 200 mM Sodium chloride |
