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9IWG

crystal structure of xanthine-II ML2/3 in complex with xanthine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2023-05-07
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.009
Spacegroup nameP 21 21 21
Unit cell lengths26.348, 117.816, 125.621
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.970 - 2.480
R-factor0.2364
Rwork0.233
R-free0.26810
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.002
RMSD bond angle0.576
Data reduction softwareHKL-3000
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.18.2_3874: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]62.8102.610
High resolution limit [Å]2.4802.480
Rmerge0.0820.976
Rmeas0.0861.015
Rpim0.0250.278
Total number of observations17751627618
Number of reflections144972119
<I/σ(I)>22.32.8
Completeness [%]97.8
Redundancy12.213
CC(1/2)0.9990.829
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2890.04 M Lithium chloride, 0.08 M Strontium chlorid, 0.02 M Magnesium chloride, 0.04 M Sodium cacodylate pH 7.0, 30% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride

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PDB entries from 2025-12-10

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