9IRZ

Crystal structure of YhaJ DNA-binding domain

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	PAL/PLS BEAMLINE 7A (6B, 6C1)
Synchrotron site	PAL/PLS
Beamline	7A (6B, 6C1)
Temperature [K]	100
Detector technology	CCD
Collection date	2022-07-07
Detector	ADSC QUANTUM 210
Wavelength(s)	0.97933
Spacegroup name	H 3
Unit cell lengths	117.157, 117.157, 35.092
Unit cell angles	90.00, 90.00, 120.00

Refinement procedure

Resolution	33.820 - 1.760
R-factor	0.1849
Rwork	0.181
R-free	0.22120
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.004
RMSD bond angle	0.663
Data reduction software	HKL-2000 (v715)
Data scaling software	HKL-2000 (v715)
Phasing software	PHENIX (1.19.2_4158)
Refinement software	PHENIX (1.19.2_4158)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	33.820	1.820
High resolution limit [Å]	1.760	1.760
Rmerge	0.062	0.223
Rmeas	0.071	0.272
Rpim	0.035	0.152
Number of reflections	17579	1671
<I/σ(I)>	13.59	4.25
Completeness [%]	98.9
Redundancy	3.7
CC(1/2)	0.997	0.873

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	8.5	291	0.1 M Tris-Cl pH 8.5, 2.0 M ammonium phosphate monobasic