Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9IKD

The apo structure of the MazF-mt3 toxin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2024-03-30
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.979
Spacegroup nameP 43 21 2
Unit cell lengths110.795, 110.795, 271.217
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution75.270 - 3.320
R-factor0.2439
Rwork0.242
R-free0.27880
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle0.610
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.21.1_5286)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]75.2703.500
High resolution limit [Å]3.3203.320
Rmerge0.1571.309
Number of reflections240182906
<I/σ(I)>18.42.8
Completeness [%]92.7
Redundancy24.2
CC(1/2)0.9990.915
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2981-1.5 M NaCl, 0.1 M NaOAc pH4.5

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon