9HGH
MyD88 peptide_1 bound to SPOP MATH domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-04-07 |
Detector | DECTRIS EIGER2 X CdTe 9M |
Wavelength(s) | 0.99987 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.000, 57.290, 60.970 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.440 - 1.900 |
R-factor | 0.1758 |
Rwork | 0.173 |
R-free | 0.23220 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.011 |
RMSD bond angle | 1.132 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.440 | 1.970 |
High resolution limit [Å] | 1.900 | 1.900 |
Number of reflections | 11453 | 1091 |
<I/σ(I)> | 9.8 | |
Completeness [%] | 99.4 | 97.8 |
Redundancy | 5.8 | |
CC(1/2) | 0.990 | 0.760 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD, 0.03 M diethyleneglycol, 0.03 M triethyleneglycol, 0.03 M tetraethyleneglycol, 0.03 M pentaethyleneglycol, 0.1 M bicine/Trizma base pH 8.5 |