9GXD
Human PPAR-gamma ligand binding domain in complex with AKGO27
This is a non-PDB format compatible entry.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE ID30B |
| Synchrotron site | ESRF |
| Beamline | ID30B |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2023-09-16 |
| Detector | DECTRIS EIGER X 9M |
| Wavelength(s) | 0.873129 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 94.109, 61.950, 119.172 |
| Unit cell angles | 90.00, 101.51, 90.00 |
Refinement procedure
| Resolution | 58.390 - 2.200 |
| R-factor | 0.2137 |
| Rwork | 0.211 |
| R-free | 0.26120 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.008 |
| RMSD bond angle | 0.959 |
| Data reduction software | DIALS |
| Data scaling software | Aimless |
| Phasing software | MOLREP |
| Refinement software | REFMAC (5) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 58.390 | 2.270 |
| High resolution limit [Å] | 2.200 | 2.200 |
| Number of reflections | 34222 | 2951 |
| <I/σ(I)> | 10.6 | 1.4 |
| Completeness [%] | 99.7 | |
| Redundancy | 6.9 | |
| CC(1/2) | 0.999 | 0.784 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.9M-1.2M sodium citrate tribasic dihydrate, 0.1M sodium cacodylate |
