Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9GUN

Structure of a Putative Cyclodipeptide synthase from Porphyromonas gingivalis

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2021-04-21
DetectorRIGAKU SATURN 944
Wavelength(s)1.5418
Spacegroup nameP 32 2 1
Unit cell lengths69.779, 69.779, 86.642
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution24.780 - 2.080
R-factor0.2249
Rwork0.224
R-free0.23680
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.002
RMSD bond angle0.479
Data reduction softwareMOSFLM
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.21.1_5286: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]24.7802.140
High resolution limit [Å]2.0792.080
Rmerge0.1050.046
Rmeas0.108
Number of reflections151203825
<I/σ(I)>20.78
Completeness [%]100.0
Redundancy20.6
CC(1/2)0.999
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293.150.2 M sodium nitrate, 0.1 M bis-tris propane (pH 8.5) and 20 % PEG 3350

251801

PDB entries from 2026-04-08

PDB statisticsPDBj update infoContact PDBjnumon