9G9S
Crystal structure of PbdA bound to veratrate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-28 |
Detector | DECTRIS EIGER2 XE CdTe 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 1 |
Unit cell lengths | 50.999, 55.357, 64.693 |
Unit cell angles | 98.68, 95.00, 99.01 |
Refinement procedure
Resolution | 63.540 - 1.850 |
Rwork | 0.208 |
R-free | 0.25800 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.697 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0430) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.540 | 63.540 | 1.890 |
High resolution limit [Å] | 1.850 | 9.060 | 1.850 |
Rmerge | 0.129 | 0.035 | 1.109 |
Rmeas | 0.182 | 0.050 | 1.568 |
Rpim | 0.129 | 0.035 | 1.109 |
Number of reflections | 57209 | 495 | 3478 |
<I/σ(I)> | 4.8 | 17.2 | 0.9 |
Completeness [%] | 97.6 | 99.4 | 95.9 |
Redundancy | 3.2 | 3.6 | 3.5 |
CC(1/2) | 0.990 | 0.991 | 0.412 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 0.8 M Sodium phosphate, 0.8 M Potassium phosphate, 0.1 M HEPES 7.5 |