Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9G1O

Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry E07

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, DESY BEAMLINE P11
Synchrotron sitePETRA III, DESY
BeamlineP11
Temperature [K]100
Detector technologyPIXEL
Collection date2023-10-07
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)1.0332
Spacegroup nameP 21 21 2
Unit cell lengths68.081, 89.745, 44.919
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution54.240 - 1.140
R-factor0.1392
Rwork0.138
R-free0.16370
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.131
Data reduction softwareXDS (Jan 10, 2022)
Data scaling softwareAimless (0.7.4)
Phasing softwarePHENIX (1.20-4459_9999)
Refinement softwarePHENIX (1.20-4459_9999)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]54.3641.163
High resolution limit [Å]1.1401.140
Rmerge0.0670.903
Rmeas0.0701.034
Rpim0.0200.488
Number of reflections926932510
<I/σ(I)>17.51.2
Completeness [%]92.050.5
Redundancy11.44.2
CC(1/2)0.9990.141
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.5291The protein was crystallized by mixing 0.45 uL of 12 mg/mL protein solution in 10 mM Hepes, pH 7.5, 50 mM NaCl, with 0.45 uL 16% (w/v) PEG3350, 0.25 M MgCl2, 0.2 M KBr, 0.1 M BisTris, pH 5.5 and 0.1 uL crystal microseeds in 26% (w/v) PEG3350, 0.25 M MgCl2, 0.2 M KBr, 0.1 M BisTris, pH 5.5. After at least 4 days of crystal growth, 40 nL of 100 mM compound, solubilized in 100% DMSO, was added using an acoustic droplet dispensing system.

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon