9FPE
Wild type Purine Nucleoside Phosphorylase from E.coli in complex with N2,3-etheno-2-aminopurine
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-02-05 |
Detector | DECTRIS EIGER2 X CdTe 16M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 120.277, 120.277, 239.409 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.030 - 1.350 |
R-factor | 0.1967 |
Rwork | 0.196 |
R-free | 0.21280 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.915 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.030 | 48.030 |
High resolution limit [Å] | 1.350 | 7.400 |
Rmerge | 0.240 | 0.046 |
Rmeas | 0.246 | 0.047 |
Rpim | 0.054 | 0.010 |
Number of reflections | 221855 | 1611 |
<I/σ(I)> | 10.2 | 73 |
Completeness [%] | 100.0 | |
Redundancy | 40.1 | 36.3 |
CC(1/2) | 1.000 | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.2 | 291 | Citrate buffer pH 5.2, amonium sulphate 15% w/v |