9EXF
Crystal structure of Yeast Clathrin Heavy Chain N-terminal domain bound to YAP1801 peptide (LIDM)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 196 |
Detector technology | PIXEL |
Collection date | 2019-10-31 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 51.083, 89.739, 188.122 |
Unit cell angles | 90.00, 90.39, 90.00 |
Refinement procedure
Resolution | 65.013 - 1.950 |
Rwork | 0.181 |
R-free | 0.21200 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.517 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | MOLREP (11.7.02) |
Refinement software | REFMAC (5.8.0430 (refmacat 0.4.82)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 81.000 | 1.980 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.108 | 1.242 |
Rpim | 0.553 | |
Number of reflections | 116855 | 5172 |
<I/σ(I)> | 11 | 1.5 |
Completeness [%] | 95.3 | 86.3 |
Redundancy | 7.7 | 7.1 |
CC(1/2) | 0.998 | 0.499 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 292 | 0.1M TRIS-HCl pH 8.5 0.28182M Lithium Sfate monohydrate 30% (w/v) PEG4000 |