9EV4
Pyruvate:quinone oxidoreductase (PQO) from Corynebacterium glutamicum CS176
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-09-03 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.9677 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 68.740, 120.022, 157.059 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 21.330 - 1.474 |
R-factor | 0.1647 |
Rwork | 0.163 |
R-free | 0.19030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 9ev3 |
RMSD bond length | 0.011 |
RMSD bond angle | 0.960 |
Data reduction software | autoPROC |
Data scaling software | Aimless (0.7.13) |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.973 | 62.973 | 1.667 |
High resolution limit [Å] | 1.474 | 4.840 | 1.474 |
Rmerge | 0.105 | 0.073 | 1.058 |
Rmeas | 0.109 | 0.076 | 1.108 |
Rpim | 0.029 | 0.021 | 0.325 |
Total number of observations | 917357 | 45269 | 37608 |
Number of reflections | 66301 | 3315 | 3315 |
<I/σ(I)> | 12.92 | 31.07 | 2.29 |
Completeness [%] | 94.7 | 99.8 | 78.2 |
Completeness (spherical) [%] | 60.6 | 99.8 | 9.9 |
Completeness (ellipsoidal) [%] | 94.7 | 99.8 | 78.2 |
Redundancy | 13.84 | 13.66 | 11.34 |
CC(1/2) | 0.997 | 0.995 | 0.793 |
Anomalous completeness (spherical) | 59.7 | 99.8 | 9.3 |
Anomalous completeness | 94.6 | 99.8 | 76.7 |
Anomalous redundancy | 7.2 | 7.6 | 5.9 |
CC(ano) | -0.016 | 0.047 | -0.010 |
|DANO|/σ(DANO) | 0.7 | 0.7 | 0.7 |
Diffraction limits | Principal axes of ellipsoid fitted to diffraction cut-off surface |
1.843 Å | 1.000, 1.000, 1.000 |
1.861 Å | 0.000, 0.000, 0.000 |
1.473 Å | 0.000, 0.000, 0.000 |
Criteria used in determination of diffraction limits | local <I/sigmaI> ≥ 1.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | 25 % (w/v) PEG 4000, 8 % (v/v) isopropanol, 0.1 M sodium acetate |