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9E35

Polaromonas naphthalenivorans phosphoenolpyruvate carboxykinase in complex with beta-sulfopyruvate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE 7B2
Synchrotron siteCHESS
Beamline7B2
Temperature [K]100
Detector technologyPIXEL
Collection date2023-01-01
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)0.9686
Spacegroup nameP 21 21 21
Unit cell lengths68.784, 86.097, 113.423
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution68.580 - 1.710
R-factor0.191
Rwork0.189
R-free0.22920
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle0.799
Data reduction softwareDIALS
Data scaling softwareDIALS
Phasing softwareMOLREP
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]68.6001.770
High resolution limit [Å]1.7101.710
Rmerge0.1722.740
Rmeas0.1792.855
Rpim0.0500.805
Number of reflections728726932
<I/σ(I)>5.70.26
Completeness [%]96.173.9
Redundancy12.612.6
CC(1/2)0.9980.655
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8293100 mM TRIS-Cl pH 8.0, 0.4 M LiCl2, 5 mM MgCl2, 1 mM MnCl2, 30-40% PEG 8000 and 10 mM beta-sulfopyruvate. 15 mg/mL PnPEPCK

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PDB entries from 2025-12-10

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