Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9DYP

Crystal Structure of Rubisco from Methanococcoides burtonii

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.1
Synchrotron siteALS
Beamline5.0.1
Temperature [K]100
Detector technologyPIXEL
Collection date2022-09-11
DetectorDECTRIS PILATUS3 2M
Wavelength(s)0.97741
Spacegroup nameP 1 21 1
Unit cell lengths86.033, 102.823, 97.732
Unit cell angles90.00, 90.14, 90.00
Refinement procedure
Resolution45.500 - 1.500
R-factor0.1622
Rwork0.162
R-free0.18570
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle0.931
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHASER
Refinement softwarePHENIX (1.21.2_5419)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.5001.540
High resolution limit [Å]1.5001.500
Number of reflections27104819315
<I/σ(I)>7.1
Completeness [%]99.9
Redundancy3.8
CC(1/2)0.9960.320
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.17 M sodium acetate, 0.085 M Tris-HCl pH 8.5, 25.5 % PEG 4,000, 15 % glycerol

250359

PDB entries from 2026-03-11

PDB statisticsPDBj update infoContact PDBjnumon