9DRZ
Structure of Lichtheimia corymbifera Kinase in complex with GDP and MG
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2024-06-25 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97936 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 120.469, 120.469, 166.733 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.460 - 2.700 |
R-factor | 0.2239 |
Rwork | 0.221 |
R-free | 0.27989 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 1.320 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.460 | 2.830 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmeas | 0.414 | |
Rpim | 0.107 | 0.954 |
Number of reflections | 20318 | 2635 |
<I/σ(I)> | 7.6 | |
Completeness [%] | 100.0 | |
Redundancy | 14.3 | 15 |
CC(1/2) | 0.993 | 0.616 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 295 | 0.1 M HEPES pH 7.5, 40% v/v Polyethylene glycol 400 |