Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9DFZ

T-junction triangle 6-11

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU R-AXIS IV
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2016-08-18
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.54
Spacegroup nameH 3
Unit cell lengths167.010, 167.010, 79.230
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution34.740 - 6.350
R-factor0.2168
Rwork0.213
R-free0.25550
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.005
RMSD bond angle0.706
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0006.620
High resolution limit [Å]6.3506.390
Rpim0.029
Number of reflections1719179
<I/σ(I)>19.1
Completeness [%]95.4
Redundancy6.8
CC(1/2)0.801
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP298DNA strands mixed with TAE/Mg2+ and 0.001 M Magnesium chloride hexahydrate, 0.005 M Tris hydrochloride, pH=7.5, 0.16 M Ammonium sulfate, 0.23 M sucrose and crystallized against (NH4)2SO4

250359

PDB entries from 2026-03-11

PDB statisticsPDBj update infoContact PDBjnumon