9D44
Crystal structure of Co(II)-bound polysaccharide deacetylase from Bacteroides ovatus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-22 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 1.00 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 69.177, 73.162, 95.424 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.470 - 1.420 |
R-factor | 0.1607 |
Rwork | 0.160 |
R-free | 0.20070 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 0.776 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.470 | 1.471 |
High resolution limit [Å] | 1.420 | 1.420 |
Rmerge | 0.112 | 1.342 |
Rpim | 0.039 | 0.463 |
Number of reflections | 91845 | 9050 |
<I/σ(I)> | 16.37 | 2.46 |
Completeness [%] | 99.9 | 100 |
Redundancy | 9.2 | 9.3 |
CC(1/2) | 0.998 | 0.807 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 277 | 0.17 M NaOAc, 0.1 M Tris pH 8.5, 15% glycerol, 27% PEG 4000, [Protein]=16.5 mg/mL |