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9D25

Crystal structure of Penicillin Binding Protein 5 (PBP5) N523A E542A Q627A variant of Enterococcus faecium

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSEALED TUBE
Source detailsBRUKER IMUS DIAMOND MICROFOCUS
Temperature [K]100
Detector technologyPIXEL
Collection date2024-05-01
DetectorBruker PHOTON III
Wavelength(s)1.54184
Spacegroup nameP 43 21 2
Unit cell lengths63.201, 63.201, 375.482
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution22.000 - 2.600
R-factor0.226
Rwork0.223
R-free0.26350
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.002
RMSD bond angle0.450
Data reduction softwareSAINT
Data scaling softwareSADABS
Phasing softwarePHASER
Refinement softwarePHENIX (1.19.1_4122)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]22.0002.710
High resolution limit [Å]2.6002.600
Rmerge0.1910.811
Rmeas0.1960.844
Number of reflections247862851
<I/σ(I)>12.73
Completeness [%]99.496.2
Redundancy18.612.7
CC(1/2)0.9970.840
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP62980.1 M MES pH 6.0, 30% v/v Jeffamine ED-2003, 0.2 M sodium chloride

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PDB entries from 2026-04-01

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