Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9D03

Co-crystal structure of circularly permuted human taspase-1 bound to ligand SMDC1014689 1-(ethenesulfonyl)-4-{[3-fluoro-4-(trifluoromethoxy)phenyl]methyl}piperazine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCLSI BEAMLINE 08ID-1
Synchrotron siteCLSI
Beamline08ID-1
Temperature [K]100
Detector technologyCCD
Collection date2017-01-13
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.987
Spacegroup nameP 65
Unit cell lengths60.330, 60.330, 316.670
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution46.830 - 2.450
R-factor0.162
Rwork0.159
R-free0.20100
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (DEV_2621)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.83046.830
High resolution limit [Å]2.4502.450
Rmerge0.0690.578
Rmeas0.0740.036
Total number of observations184707
Number of reflections23935283
<I/σ(I)>20.954
Completeness [%]99.9100
Redundancy7.727.69
CC(1/2)0.9990.999
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.8289HUMAN TASPASE-1 VCID 11900 AT 9.23 MG/ML IN 20 MM HEPES PH 8, 0.5 M NACL, 5% GLYCEROL AGAINST PACT SCREEN CONDITION B11 CONTAINING 0.1M MES, PH 5.8, 17% PEG 6000, 0.2M CALCIUM CHLORIDE + 2.5MM 107873 (SMDC1014689) SUPPLEMENTED WITH 20% ETHYLENE GLYCOL AS A CRYO-PROTECTANT, CRYSTAL TRACKING ID 286834 A5, UNIQUE PUCK ID KJB2-3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K

245663

PDB entries from 2025-12-03

PDB statisticsPDBj update infoContact PDBjnumon