9D02
Co-crystal structure of circularly permuted human taspase-1 bound to ligand SMDC1014883 (2R)-4-(ethenesulfonyl)-1-{[3-fluoro-4-(trifluoromethoxy)phenyl]methyl}-2-[(prop-2-yn-1-yloxy)methyl]piperazine
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | CLSI BEAMLINE 08ID-1 |
| Synchrotron site | CLSI |
| Beamline | 08ID-1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2017-05-17 |
| Detector | MARMOSAIC 225 mm CCD |
| Wavelength(s) | 0.97856 |
| Spacegroup name | P 65 |
| Unit cell lengths | 60.430, 60.430, 317.710 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 49.710 - 2.150 |
| R-factor | 0.159 |
| Rwork | 0.157 |
| R-free | 0.19500 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | internal molecule |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHENIX |
| Refinement software | PHENIX (DEV_2733) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 49.710 | 49.710 |
| High resolution limit [Å] | 2.150 | 2.150 |
| Rmerge | 0.074 | 0.530 |
| Rmeas | 0.081 | 0.048 |
| Total number of observations | 202637 | |
| Number of reflections | 35557 | 422 |
| <I/σ(I)> | 15.07 | 2.91 |
| Completeness [%] | 99.9 | 99.9 |
| Redundancy | 5.699 | 5.334 |
| CC(1/2) | 0.998 | 0.997 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.8 | 287 | Human taspase-1 VCID 11900 at 9.23 mg/mL in 20 mM HEPES pH 8, 0.5 M NaCl, 5% glycerol against Pact screen condition B11 containing 0.1M MES, pH 5.8, 17% PEG 6000, 0.2M Calcium chloride + 2.5mM 108131 (SMDC1014883) supplemented with 20% ethylene glycol as a cryo-protectant, crystal tracking ID 291536 B3, unique puck ID zhg3-3 |






