9C8O
High-resolution structure of cytochrome c peroxidase from yeast at ambient temperature and 1.5 kbar
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE 7B2 |
Synchrotron site | CHESS |
Beamline | 7B2 |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2022-05-23 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 0.88560 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 44.730, 74.050, 100.890 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.880 - 2.310 |
R-factor | 0.1986 |
Rwork | 0.193 |
R-free | 0.24980 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.478 |
Data scaling software | HKL-2000 (v722) |
Phasing software | PHENIX (1.21_5207) |
Refinement software | PHENIX (1.21.1_5286) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 26.880 | 2.370 |
High resolution limit [Å] | 2.310 | 2.310 |
Rmerge | 0.237 | 0.789 |
Rmeas | 0.262 | 0.872 |
Rpim | 0.107 | 0.363 |
Number of reflections | 12171 | 881 |
<I/σ(I)> | 6.7 | 1.8 |
Completeness [%] | 79.6 | 75.82 |
Redundancy | 5.2 | |
CC(1/2) | 0.961 | 0.750 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 10-25 % polyethylene glycol 550 (MME) and 100 mM 2-(N-morpholino)ethanesulfonic acid (pH 6.1-7.1) |