9C34
Proline utilization A with the FADH- N5 atom covalently modified by proline
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-27 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 101.603, 102.572, 127.203 |
Unit cell angles | 90.00, 106.47, 90.00 |
Refinement procedure
Resolution | 67.380 - 1.880 |
R-factor | 0.1714 |
Rwork | 0.170 |
R-free | 0.20600 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.010 |
RMSD bond angle | 1.060 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.21_5207:0000)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 121.990 | 1.920 |
High resolution limit [Å] | 1.880 | 1.880 |
Rmerge | 0.103 | 1.173 |
Rmeas | 0.111 | 1.273 |
Rpim | 0.042 | 0.486 |
Total number of observations | 56824 | |
Number of reflections | 385647 | 8769 |
<I/σ(I)> | 12.5 | 1.4 |
Completeness [%] | 97.2 | |
Redundancy | 7.1 | 6.5 |
CC(1/2) | 0.998 | 0.534 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 286 | CRYSTALLIZATION: 5 mg/mL PROTEIN, 14% (W/V) PEG-3350, 0.2M AMMONIUM SULFATE, 0.1M MGCL2, 0.1M HEPES AT PH 8.0, 0.1M NA FORMATE, 10 mM NAD+. CRYSTAL WAS SOAKED IN 20% (W/V) PEG-200, 40 mM L-PROLINE, 1 mM COENZYME Q1, 1mM NAD+, FOR 24 HRS AND THEN FLASH-COOLED IN LIQUID NITROGEN |