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9BYJ

Crystal Structure of Hck in complex with the Src-family kinase inhibitor A-419259

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-B
Synchrotron siteAPS
Beamline23-ID-B
Temperature [K]100
Detector technologyPIXEL
Collection date2020-06-19
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.03317
Spacegroup nameP 21 21 21
Unit cell lengths43.346, 85.025, 128.798
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.510 - 1.800
R-factor0.2003
Rwork0.199
R-free0.21920
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.015
RMSD bond angle1.601
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.5131.860
High resolution limit [Å]1.8001.800
Rmerge0.1482.898
Rmeas0.1603.135
Number of reflections449904379
<I/σ(I)>8.50.6
Completeness [%]100.099.64
Redundancy7.16.97
CC(1/2)0.9980.301
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29310 mM Tris-HCl, pH 8.3, 75 mM NaCl, 5% glycerol, 2 mM TCEP, 0.1 M sodium thiocyanate, 10% w/v PEG 3350, 0.095 mM 7-[trans-4-(4-Methyl-1-piperazinyl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-Pyrrolo[2,3-d]pyrimidin-4-amine, 0.5 mM N~2~-{[2-(2,4-difluorophenoxy)pyridin-3-yl]methyl}-N~4~-isopropylpyrimidine-2,4-diamine,1 % DMSO

250835

PDB entries from 2026-03-18

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