9BJR
X-ray crystal structure of Y168F variant Thermothelomyces thermophilus polysaccharide monooxygenase 9E
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-04-29 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.97741 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 97.989, 119.970, 92.290 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 58.620 - 2.200 |
R-factor | 0.1777 |
Rwork | 0.175 |
R-free | 0.21280 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.650 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 58.620 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.097 | 0.344 |
Rmeas | 0.113 | 0.407 |
Rpim | 0.057 | 0.211 |
Number of reflections | 27208 | 2376 |
<I/σ(I)> | 9.2 | 3.6 |
Completeness [%] | 97.8 | 99.3 |
Redundancy | 3.7 | 3.5 |
CC(1/2) | 0.992 | 0.843 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | The crystal was grown by hanging drop in conditions optimized from Hampton Index HT G8 (0.2 M Ammonium acetate, 0.1 M HEPES pH 7.5, 35 % w/v polyethylene glycol 3,350). 1 ul 30 mg/mL Mt PMO9E in 50 mM MOPS, 50 mM MES was mixed with 1 uL with 0.2 M Ammonium acetate, 0.1 M HEPES pH 7.5, and 35% PEG 3,350. The crystal was then cryoprotected for 10 seconds in well solution mixed with cryoprotectants to a final concentration of 8% w/v sucrose, 2% w/v glucose, 8% v/v glycerol, and 8% ethylene glycol |