8ZJB
Oomycete Nudix effectors display WY-Nudix conformations with mRNA decapping activity
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-05-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9864 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 73.364, 164.496, 169.545 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.350 - 3.190 |
R-factor | 0.2587 |
Rwork | 0.256 |
R-free | 0.31080 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.363 |
Data reduction software | DIALS |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.18.2_3874: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.260 |
High resolution limit [Å] | 3.190 | 3.190 |
Rmerge | 0.139 | 1.240 |
Rmeas | 0.154 | |
Rpim | 0.065 | |
Number of reflections | 34822 | 1668 |
<I/σ(I)> | 21.8 | |
Completeness [%] | 99.8 | 100 |
Redundancy | 6 | 6.5 |
CC(1/2) | 0.978 | 0.604 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.3 | 277 | 0.2 M sodium citrate trisbase dihydrate (pH 8.3), 20% (w/v) PEG 3350 |