Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8ZHT

Structure of PpiD-YfgM complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNFPSS BEAMLINE BL18U
Synchrotron siteNFPSS
BeamlineBL18U
Temperature [K]100
Detector technologyPIXEL
Collection date2023-08-25
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.987
Spacegroup nameP 2 21 21
Unit cell lengths76.566, 81.347, 212.851
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution34.190 - 3.000
R-factor0.1818
Rwork0.181
R-free0.21810
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle0.848
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]34.1902.279
High resolution limit [Å]2.2002.200
Number of reflections6542365423
<I/σ(I)>1.49
Completeness [%]95.6
Redundancy9.9
CC(1/2)0.9800.530
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP291.15PEG3350, Sodium citrate, n-Octyl-D-glucopyranoside

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon