Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8ZGA

F-degron fused ZZ-domain of the Arabidopsis thaliana E3 ubiquitin-protein ligase PRT1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL44XU
Synchrotron siteSPring-8
BeamlineBL44XU
Temperature [K]100
Detector technologyPIXEL
Collection date2022-01-18
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.28
Spacegroup nameP 21 21 21
Unit cell lengths48.729, 86.439, 89.769
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.830 - 2.100
R-factor0.2605
Rwork0.257
R-free0.29450
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)8zg8
RMSD bond length0.004
RMSD bond angle0.643
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.18rc7_3834)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.8302.175
High resolution limit [Å]2.1002.100
Rmerge0.1742.578
Rmeas0.1812.675
Rpim0.0490.705
Number of reflections227522193
<I/σ(I)>11.571.2
Completeness [%]99.7
Redundancy14
CC(1/2)0.9950.709
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293Divalents Buffer System 2 pH 7.5 Precipitant Mix 4

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon