Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8Z58

Crystal structure of human N141V-SIRT5 in complex with succinylated Prx1 fragment

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyPIXEL
Collection date2020-07-08
DetectorDECTRIS EIGER X 16M
Wavelength(s)1
Spacegroup nameC 2 2 21
Unit cell lengths43.916, 73.430, 163.774
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution37.690 - 2.405
R-factor0.2145
Rwork0.212
R-free0.25820
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.004
RMSD bond angle0.720
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX ((1.12_2829: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]37.6902.490
High resolution limit [Å]2.4002.400
Rmeas0.1290.652
Number of reflections105881034
<I/σ(I)>10.13.2
Completeness [%]98.9
Redundancy5.98
CC(1/2)0.9950.899
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29324% PEG 3350, 0.1M Tris-HCl pH 8.5

250835

PDB entries from 2026-03-18

PDB statisticsPDBj update infoContact PDBjnumon