8Z3A
Crystal structure of Sonic hedgehog in complex with antibody 5E1 without metals
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-18 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 69.370, 83.990, 126.850 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.670 - 1.750 |
R-factor | 0.17677 |
Rwork | 0.175 |
R-free | 0.20745 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.014 |
RMSD bond angle | 1.825 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 53.500 | 1.840 |
High resolution limit [Å] | 1.750 | 1.750 |
Rmerge | 0.117 | 0.943 |
Rpim | 0.040 | 0.339 |
Number of reflections | 75399 | 10836 |
<I/σ(I)> | 11.8 | 2.3 |
Completeness [%] | 99.9 | 99.7 |
Redundancy | 9.3 | 8.5 |
CC(1/2) | 0.997 | 0.693 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 200mM KNO3, 20% PEG 3350 |