Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8YYK

Structure of RNase J2 wild type at room temperature

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU R-AXIS IV
Temperature [K]278
Detector technologyIMAGE PLATE
Collection date2022-10-20
DetectorRIGAKU RAXIS IV
Wavelength(s)1.541
Spacegroup nameP 1 21 1
Unit cell lengths65.304, 133.380, 117.751
Unit cell angles90.00, 92.02, 90.00
Refinement procedure
Resolution58.600 - 3.200
Rwork0.205
R-free0.24770
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle1.118
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0350)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]58.6003.370
High resolution limit [Å]3.2003.200
Rmerge0.1900.600
Number of reflections299724411
<I/σ(I)>4.6
Completeness [%]90.1
Redundancy2.6
CC(1/2)0.9200.480
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1BATCH MODE5.6291100mM tri-sodium citrate dihydrate pH 5.6, 20% PEG 4000, 20% Isopropanol, 40% Formamide

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon