8YQL
Roadblock domain from a Lokiarchaeota archaeon Roadblock-Longin protein in P31
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-10-12 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.99999 |
Spacegroup name | P 31 |
Unit cell lengths | 74.816, 74.816, 58.666 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.490 - 2.200 |
R-factor | 0.206 |
Rwork | 0.203 |
R-free | 0.25570 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.001 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.490 | 2.280 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.059 | 0.899 |
Rmeas | 0.073 | 1.119 |
Rpim | 0.044 | 0.655 |
Number of reflections | 18642 | |
<I/σ(I)> | 7.9 | 1 |
Completeness [%] | 98.0 | 99.65 |
Redundancy | 2.64 | 2.68 |
CC(1/2) | 0.996 | 0.371 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.2 M sodium chloride, 0.1 M sodium cacodylate, pH 6.5, 1.0 M bi-sodium citrate |