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8YO0

Crystal Structure of Human Rab23 Y79del in Complex with GDP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-X
Temperature [K]100
Detector technologyPIXEL
Collection date2024-01-19
DetectorRIGAKU HyPix-6000HE
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths40.787, 51.606, 74.597
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution15.640 - 1.300
R-factor0.1595
Rwork0.158
R-free0.18580
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.011
RMSD bond angle1.126
Data reduction softwareCrysalisPro
Data scaling softwareCrysalisPro
Phasing softwarePHASER
Refinement softwarePHENIX ((1.18.2_3874: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]15.6401.320
High resolution limit [Å]1.3001.300
Rmerge0.0861.025
Rmeas0.0941.153
Rpim0.0380.519
Total number of observations2257009419
Number of reflections394901954
<I/σ(I)>11.21.9
Completeness [%]99.9
Redundancy5.74.8
CC(1/2)0.9990.593
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP52930.1M SPG pH 5.0, 27.5% PEG 1500

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