8YKR
Enhancing the Gastric Stability of Ferritin Nanocage via Computational-Assisted Disulfide Bond Engineering
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL18U1 |
| Synchrotron site | SSRF |
| Beamline | BL18U1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2023-11-27 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.978 |
| Spacegroup name | I 4 |
| Unit cell lengths | 125.080, 125.080, 175.917 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 29.482 - 2.500 |
| R-factor | 0.1873 |
| Rwork | 0.185 |
| R-free | 0.23020 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.010 |
| RMSD bond angle | 1.139 |
| Data reduction software | HKL-3000 |
| Data scaling software | HKL-3000 |
| Phasing software | PHENIX |
| Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 30.000 | 30.000 | 2.540 |
| High resolution limit [Å] | 2.500 | 6.760 | 2.500 |
| Rmerge | 0.104 | 0.031 | 0.801 |
| Rmeas | 0.112 | 0.033 | 0.868 |
| Rpim | 0.043 | 0.013 | 0.332 |
| Total number of observations | 314666 | ||
| Number of reflections | 46591 | 2384 | 2327 |
| <I/σ(I)> | 4.7 | ||
| Completeness [%] | 100.0 | 99.9 | 100 |
| Redundancy | 6.8 | 6.6 | 6.8 |
| CC(1/2) | 0.993 | 0.999 | 0.746 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION | 293 | sodium phosphate monobasic monohydrate, potassium phosphate dibasic |






