8YK5

Structure of glycerophosphoethanolamine ethanolaminephosphodiesterase from Streptomyces sanglieri

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SPRING-8 BEAMLINE BL32XU
Synchrotron site	SPring-8
Beamline	BL32XU
Temperature [K]	100
Detector technology	CCD
Collection date	2014-06-13
Detector	RAYONIX MX300HE
Wavelength(s)	1
Spacegroup name	C 1 2 1
Unit cell lengths	143.742, 179.184, 88.450
Unit cell angles	90.00, 120.44, 90.00

Refinement procedure

Resolution	40.252 - 2.100
R-factor	0.1831
Rwork	0.183
R-free	0.20990
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.008
RMSD bond angle	0.891
Data reduction software	HKL-2000
Data scaling software	HKL-2000
Phasing software	PHENIX (1.13_2998)
Refinement software	PHENIX (1.13_2998)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	50.000	50.000	2.180
High resolution limit [Å]	2.100	4.520	2.100
Rmerge		0.049	0.785
Rmeas	0.139	0.057	0.945
Rpim	0.071	0.029	0.518
Number of reflections	108015	11422	8610
<I/σ(I)>	6.6
Completeness [%]	95.5	100	76.4
Redundancy	3.6	3.9	2.7
CC(1/2)		0.996	0.586

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP		298	0.1 M Bis-tris propane buffer (pH 6.5), 30% PEG 3350, 0.2 M sodium fluoride