8Y9P
Crystal structure of bacterial activating sulfotransferase SgdX2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL45XU |
Synchrotron site | SPring-8 |
Beamline | BL45XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-06-04 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1 |
Spacegroup name | P 65 |
Unit cell lengths | 86.760, 86.760, 63.740 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.610 - 1.640 |
R-factor | 0.166 |
Rwork | 0.165 |
R-free | 0.18670 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.311 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.610 | 1.730 |
High resolution limit [Å] | 1.640 | 1.640 |
Rmeas | 0.060 | 0.803 |
Number of reflections | 33523 | 5400 |
<I/σ(I)> | 28.62 | 4.06 |
Completeness [%] | 100.0 | |
Redundancy | 14.3 | |
CC(1/2) | 0.999 | 0.857 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 M Sodium chloride, 0.1 M Bis-Tris, pH 5.5, 25% (w/v) PEG 3350 |